Report for Sequence Feature Glyma20g03260
Feature Type: gene_model
Chromosome: Gm20
Start: 2952842
stop: 2957114
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma20g03260
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G13900 AT
Annotation by Michelle Graham. TAIR10: Purple acid phosphatases superfamily protein | chr1:4753494-4755554 REVERSE LENGTH=656
SoyBase E_val: 0 ISS
GO:0006109 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of carbohydrate metabolic process
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0005768 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endosome
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0005802 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0003993 GO-mf
Annotation by Michelle Graham. GO Molecular Function: acid phosphatase activity
SoyBase N/A ISS
GO:0004722 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity
SoyBase N/A ISS
KOG1378
KOG
Purple acid phosphatase
JGI ISS
PTHR22953 Panther
ACID PHOSPHATASE RELATED
JGI ISS
PF00149 PFAM
Calcineurin-like phosphoesterase
JGI ISS
UniRef100_G0T437 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Purple acid phosphatases n=1 Tax=Glycine max RepID=G0T437_SOYBN
SoyBase E_val: 0 ISS
UniRef100_G0T437 UniRef
Annotation by Michelle Graham. Best UniRef hit: Purple acid phosphatases n=1 Tax=Glycine max RepID=G0T437_SOYBN
SoyBase E_val: 0 ISS
Proteins Associated with Glyma20g03260
Locus Gene Symbol Protein Name
PAP35 Purple acid phosphatase 35 gene
PAP35 Purple acid phosphatase gene 35
Expression Patterns of Glyma20g03260
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma20g03260 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.20g026800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma20g03260
Coding sequences of Glyma20g03260
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma20g03260.1 sequence type=CDS gene model=Glyma20g03260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATTCCCGATCTACCCCTCCCCTTCCTCTTCTCCTTATTCATCATCTTCTTCCACCTCGCTGAATCCAAACCCTCCCTCACCGCCACGCCAACCACCCTCCCAGCCTCCGGCGCCACCGTCAATCTCCGCTGGTCCGGCATCCCTTCCCCCTCCGACCTCGACTTCCTCGCCATCTATTCCCCTCCGACCTCCCCGCACGACAACTTCATCGGATACCTCTTCCTCTCGCAGTCCGCCACGTGGCGCACCGGCTCCGGCAACCTCTCCCTCCCCCTCGTCGACCTCCGCTCCAACTACTCGTTCCGCATCTTCAGCTGGACCCGCGCCGAGATCAACCCCAAGCGCCAGGACCACGATCACAACCCTCTCCCGGTCACACGCCACCTCCTCGCGTTTTCGGAGGAGGTCTCCTTCGCCCCTCACCGTGGGCCCCAACAGATCCACCTGGCGTTCGTTGGGGCCCACGGCAAGGAGGAGGATATGCGCGTGATGTACATCACGCGCGATCCGAGAGAGACCTACGTAAGGTACGGGGAGAGGGAGGATAAGCTTGATGGGATTGCGGTCGCACGTGTGGAGAGGTACGAGAGGGAGCACATGTGCGACGCGCCTGCCAACACGAGTGTTGGGTGGAGGGACCCTGGGTTTATCCACGACGCCGTTCTCATAGGTTTGAAGAAGGGACAGAGGTATTATTACAAGGTTGGAAATGATAACGGAGGTTGGAGTGCAACTCAAAGTTTTGTGTCGAGGAATAGTGATTCAGACGAAACAATAGCTTTCCTGTTTGGTGACATGGGAACAGCTGTACCATACAATACGTTTCTGCGAACGCAGGATGAAAGCATATCAACCATGAAGTGGATCCTCCGTGATGTTGAAGCTCTAGGCGACACGCCAGCCTTTGTGTCGCACATTGGAGACATTAGTTATGCAAGAGGTTATTCCTGGTTGTGGGACCATTTTTTCGCCCAGATTGAACCTGTTGCCTCCCAAGTGGCATACCATGTTTGCATTGGCAATCATGAGTATGACTGGCCTTTGCAGCCATGGAAACCTGATTGGGCCAGTTATGGAAAAGATGGGGGTGGTGAGTGTGGTGTGCCTTACAGTTTAAGGTTTAACATGCCCGGAAACTCTTCAGAACTCACTGGAAATGCTGCAGCCCCACCAACTAGGAATCTTTATTACTCATTTGATATGGGAGCAGTACACTTTGTGTATATTTCCACGGAGACCAATTTTGTTCCTGGGAGCAAACAGTACGACTTCTTGAAGCATGATTTGGAATCGGTTAACAGGAGCAAGACTCCTTTTGTGGTGGTGCAAGGGCACAGGCCCATGTACACTACCAGCCATGAAAATAGGGATGCTGCTTTAAGAGGAAAGATGCTTGAGCACTTGGAACCTCTGTTGGTGAATAACAATGTGACACTTGCCCTTTGGGGTCATGTTCATAGATACGAGAGATTTTGTCCACTGAATAACTTCACTTGTGGTGTTAATGCGGGTCACAATGCAGGGGACAAAAAAGGATATACTGTTCACATTGTGATCGGCATGGCAGGGCAAGACTGGCAACCTGTCTGGGAACCAAGGCCAGACCATCCCGATGATCCAATCTTTCCACAGCCAAAATGGTCTCTGTACCGCGGAGGCGAGTTTGGGTACACAAGACTCGTCGCTACAAAGCAGAAGCTCGTGCTTTCTTATGTGGGAAACCATGACGGTGAGGTGCATGATCAGTTGGAAATTCTGGCATCTGGGGAAGTTGTCAGTGGTGACGGAGGCTGTAGTATTGCTGATGCTAATTCTAAAGCTGGAAATGTGATTGTGGAATCCACATTGTCTTGGTATGTCAAGGGAGGAAGTGTGCTGCTGCTTGGTGCATTCATGGGTTACGTTTTTGGTTACGTTACAAGTGCAAGGAAGAAGTCTGAGGTGCCAGAGAGCAATTGGACTCCGGTGAAGACTGAGGAAACTTGA
Predicted protein sequences of Glyma20g03260
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma20g03260.1 sequence type=predicted peptide gene model=Glyma20g03260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MIPDLPLPFLFSLFIIFFHLAESKPSLTATPTTLPASGATVNLRWSGIPSPSDLDFLAIYSPPTSPHDNFIGYLFLSQSATWRTGSGNLSLPLVDLRSNYSFRIFSWTRAEINPKRQDHDHNPLPVTRHLLAFSEEVSFAPHRGPQQIHLAFVGAHGKEEDMRVMYITRDPRETYVRYGEREDKLDGIAVARVERYEREHMCDAPANTSVGWRDPGFIHDAVLIGLKKGQRYYYKVGNDNGGWSATQSFVSRNSDSDETIAFLFGDMGTAVPYNTFLRTQDESISTMKWILRDVEALGDTPAFVSHIGDISYARGYSWLWDHFFAQIEPVASQVAYHVCIGNHEYDWPLQPWKPDWASYGKDGGGECGVPYSLRFNMPGNSSELTGNAAAPPTRNLYYSFDMGAVHFVYISTETNFVPGSKQYDFLKHDLESVNRSKTPFVVVQGHRPMYTTSHENRDAALRGKMLEHLEPLLVNNNVTLALWGHVHRYERFCPLNNFTCGVNAGHNAGDKKGYTVHIVIGMAGQDWQPVWEPRPDHPDDPIFPQPKWSLYRGGEFGYTRLVATKQKLVLSYVGNHDGEVHDQLEILASGEVVSGDGGCSIADANSKAGNVIVESTLSWYVKGGSVLLLGAFMGYVFGYVTSARKKSEVPESNWTPVKTEET*
SoyBase
Follow us on Twitter @SoyBaseDatabase
